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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4696443_4704113_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4696443 - 4704113
Intron Length:
7671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
CCCAGTATGACT
Flanking Amino Acid:
VVEDNAVLSADTLRYYITCS
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
89.7
0.89
0.7
84.7
30.1
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
41.2
-0.6
2
51.8
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017182
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032446
4644921 - 4711109
66189
ENSAPLT00000020985
4644921 - 4712199
67279
ENSAPLT00000040774
4644921 - 4711109
66189