About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4705470_4705569_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4705470 - 4705569
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CTTTCAATAATT
Flanking Amino Acid:
SASREHPTSKEYLMRIQEVL
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
82.8
0.74
0.9
76.5
37.7
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
60.9
0.42
1.9
82.17
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017182
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020985
4644921 - 4712199
67279
ENSAPLT00000040774
4644921 - 4711109
66189
ENSAPLT00000032446
4644921 - 4711109
66189