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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_471451_476954_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
471451 - 476954
Intron Length:
5504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTCTTTT
5'SS Class:
weak_major
3'SS Sequence:
CATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATGTTAAAA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
76.6
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.7
84.9
29.5
Minor 5ss
58.2
0.28
2.3
75.5
40.6
Minor BPS
54.3
0.13
2.2
72.98
38.7

Associated Gene:

Gene:
USP31
Ensembl Gene ID:
ENSAPLG00000014939
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015576
471367 - 497535
26169