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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_478514_479074_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
478514 - 479074
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
GCTTCCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTGGCTCTCATA
Flanking Amino Acid:
ELTGERSEDDGGFSTRPFVR
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
81.4
31.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.8
0.56
0.8
66.2
35.8
Minor 5ss
42.5
-0.8
2.8
56.3
42.5
Minor BPS
45
-0.4
2.1
58.98
41.8

Associated Gene:

Gene:
USP31
Ensembl Gene ID:
ENSAPLG00000014939
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015576
471367 - 497535
26169