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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4835613_4836470_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4835613 - 4836470
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTTCCTTTATA
Flanking Amino Acid:
VQLIDFSPCERYLVTFSPLM
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.1
39.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
82.7
0.74
0.7
77.3
30.7
Minor 5ss
44.5
-0.6
3.2
64.5
46.9
Minor BPS
74.1
0.75
1.5
81.62
33

Associated Gene:

Gene:
EIF3B
Ensembl Gene ID:
ENSAPLG00000016062
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033447
4826547 - 4843803
17257
ENSAPLT00000016780
4828213 - 4843803
15591