Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4837771_4838316_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4837771 - 4838316

Intron Length:

546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGGTTG

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAT

U12 Branch Point Sequence:

TAGCCTTTGACT

Flanking Amino Acid:

IPEKQPFKDLGNLRYWLEDP

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

72.2

39.9

Major BPS

76.8

0.67

40.9

Major PPT

86.2

0.81

0.7

85.6

29.2

Minor 5ss

40.5

-1.1

3.3

52.3

45.8

Minor BPS

68.5

0.66

1.2

77.4

39.1

Associated Gene:

Gene:

EIF3B

Ensembl Gene ID:

ENSAPLG00000016062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033447

4826547 - 4843803

17257

ENSAPLT00000016780

4828213 - 4843803

15591