Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4840138_4843199_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4840138 - 4843199

Intron Length:

3062

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGGGCC

5'SS Class:

major

3'SS Sequence:

TTTTTGTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCAAAT

U12 Branch Point Sequence:

GGAGCCTCAAAT

Flanking Amino Acid:

EDFVDDISDEELLGDVLKDQ

Intron Amino Acid Position:

173

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

65.5

34.2

Major BPS

64.9

0.37

1.1

70.9

31.9

Major PPT

92.6

0.96

0.7

88.3

28.9

Minor 5ss

23.6

-3

3.5

32.2

42.8

Minor BPS

49.6

0.05

1.8

64.63

44.7

Associated Gene:

Gene:

EIF3B

Ensembl Gene ID:

ENSAPLG00000016062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016780

4828213 - 4843803

15591

ENSAPLT00000033447

4826547 - 4843803

17257