About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4848960_4855874_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4848960 - 4855874
Intron Length:
6915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAG
U12 Branch Point Sequence:
GTCTACTGGACT
Flanking Amino Acid:
SYCIKERAHSDLAKPPVNEP
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
51.1
0.03
1.8
71.4
45.1
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
56.1
0.27
1.8
74.06
42.4

Associated Gene:

Gene:
SNX8
Ensembl Gene ID:
ENSAPLG00000015927
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047911
4848878 - 4867646
18769