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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4856066_4858065_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4856066 - 4858065
Intron Length:
2000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
CCCTCTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTCCCCTCTATT
Flanking Amino Acid:
KHVEYEVSSKRFKCSVYRRY
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.4
0.64
0.8
71.9
31.2
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
52.7
0.17
1.9
73.93
42.8

Associated Gene:

Gene:
SNX8
Ensembl Gene ID:
ENSAPLG00000015927
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047911
4848878 - 4867646
18769
ENSAPLT00000016627
4848145 - 4867646
19502