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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4858184_4860884_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4858184 - 4860884
Intron Length:
2701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GGTCTATTAATT
Flanking Amino Acid:
PALPPKRMLGADREFIESRR
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.6
0.71
0.7
77.5
24.5
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
57.6
0.32
1.6
72.2
38.3

Associated Gene:

Gene:
SNX8
Ensembl Gene ID:
ENSAPLG00000015927
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047911
4848878 - 4867646
18769
ENSAPLT00000016627
4848145 - 4867646
19502