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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_486298_487423_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
486298 - 487423
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAG
U12 Branch Point Sequence:
CTCTCCCCAGGC
Flanking Amino Acid:
ISLPIPLPHTRPLYITVVYQ
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
69.2
41.7
Major BPS
44.4
-0.3
1.6
54.3
42.9
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
41
-1
3.2
58
46.6
Minor BPS
40.3
-0.7
2.2
50.97
45.8

Associated Gene:

Gene:
USP31
Ensembl Gene ID:
ENSAPLG00000014939
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015576
471367 - 497535
26169