Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4863126_4864208_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4863126 - 4864208

Intron Length:

1083

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CCTTGTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAAAAT

U12 Branch Point Sequence:

CTTACATAAAAT

Flanking Amino Acid:

ALLADKAVQQGKQEENDVVE

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

22.3

Major BPS

61.8

0.29

1.1

67.7

34.6

Major PPT

80.2

0.68

0.8

72.6

37.6

Minor 5ss

28.9

-2.4

3.2

39.6

46.4

Minor BPS

48.5

-0

2.1

71.28

Associated Gene:

Gene:

SNX8

Ensembl Gene ID:

ENSAPLG00000015927

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047911

4848878 - 4867646

18769

ENSAPLT00000016627

4848145 - 4867646

19502