Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4865242_4865648_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4865242 - 4865648

Intron Length:

407

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGCAG

5'SS Class:

major

3'SS Sequence:

CCTCTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

TTTCACTGAATT

Flanking Amino Acid:

VEQLESRIVEQENAILTMEL

Intron Amino Acid Position:

355

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

1.1

60.5

45.8

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

86.2

0.81

0.7

83.9

24.2

Minor 5ss

28.7

-2.4

3.4

37.1

47.5

Minor BPS

64.7

0.54

1.6

83.92

36.3

Associated Gene:

Gene:

SNX8

Ensembl Gene ID:

ENSAPLG00000015927

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047911

4848878 - 4867646

18769

ENSAPLT00000016627

4848145 - 4867646

19502