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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4877523_4878214_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4877523 - 4878214
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTGTCATTCATT
Flanking Amino Acid:
AVEKVNALGTDPSAPTGFVL
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74
0.54
0.9
66.6
39.8
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
53
0.17
2
73.76
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021373
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044804
4873425 - 4878639
5215