About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4881392_4881871_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4881392 - 4881871
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
ATGCACTGGGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCCCTTTTCACA
Flanking Amino Acid:
LQMQYQQRVQLEEQAGRIHS
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
55.5
0.12
1.1
50.7
43
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
49.4
-0
1.7
59.25
41.4

Associated Gene:

Gene:
MAD1L1
Ensembl Gene ID:
ENSAPLG00000015788
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016488
4881238 - 5228903
347666