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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_488721_489177_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
488721 - 489177
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TGGGCTTTATTC
Flanking Amino Acid:
VKYGGVPPLKPPLEDDVLLE
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
49.9
-0
1.7
58.18
41.7

Associated Gene:

Gene:
USP31
Ensembl Gene ID:
ENSAPLG00000014939
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015576
471367 - 497535
26169