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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4887307_4888587_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4887307 - 4888587
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAGAA
5'SS Class:
major
3'SS Sequence:
CTTTTCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGGCTTTCAATT
Flanking Amino Acid:
RQLREENAYFREMKENNGLL
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
69.8
29.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.2
0.66
0.8
73.5
30
Minor 5ss
23.6
-3
3.1
28.7
43.6
Minor BPS
51.2
0.12
1.5
65.73
39.4

Associated Gene:

Gene:
MAD1L1
Ensembl Gene ID:
ENSAPLG00000015788
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016488
4881238 - 5228903
347666