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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4888703_4889657_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4888703 - 4889657
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTATACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
CTGTCTCAAACT
Flanking Amino Acid:
QLVTVELENEKLLGKLKSWE
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
73.2
0.52
0.8
70.6
34.5
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
50
0.08
2
71.87
45.4

Associated Gene:

Gene:
MAD1L1
Ensembl Gene ID:
ENSAPLG00000015788
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016488
4881238 - 5228903
347666