Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4889720_4917536_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4889720 - 4917536

Intron Length:

27817

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTAATTGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTGTTTTAATT

Flanking Amino Acid:

KLDQSTGLNIRTPDDLSRQI

Intron Amino Acid Position:

329

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

71.5

38.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.1

0.54

69.9

Minor 5ss

45.1

-0.5

3.2

65.3

46.1

Minor BPS

74.3

0.84

1.2

86.64

33.8

Associated Gene:

Gene:

MAD1L1

Ensembl Gene ID:

ENSAPLG00000015788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016488

4881238 - 5228903

347666