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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4982124_5024539_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4982124 - 5024539
Intron Length:
42416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTCTTCCCAACA
Flanking Amino Acid:
LQKRVLLLTKERDGMRAILE
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
78.2
0.63
0.8
74.2
29.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
55.6
0.17
1.9
71.95
40.1

Associated Gene:

Gene:
MAD1L1
Ensembl Gene ID:
ENSAPLG00000015788
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016488
4881238 - 5228903
347666