About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_498702_499532_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
498702 - 499532
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TTCTCTAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTTTCTCTAACG
Flanking Amino Acid:
AVTICNINPYKYSSMKDYLS
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
67.1
44
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
74.4
0.55
0.9
70.3
33.9
Minor 5ss
36.1
-1.6
3.5
47.8
42.2
Minor BPS
72.1
0.56
1.7
80.09
35.8

Associated Gene:

Gene:
SCNN1G
Ensembl Gene ID:
ENSAPLG00000013925
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023967
497936 - 508159
10224
ENSAPLT00000014553
497936 - 508159
10224
ENSAPLT00000047072
497936 - 508159
10224