About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_499828_500258_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
499828 - 500258
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTAATTATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCCTTTGTAATT
Flanking Amino Acid:
DSNDIIGFQLCDANNSSECA
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
73.1
0.52
1
71.5
42.8
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
51.9
0.14
2
69.97
42.5

Associated Gene:

Gene:
SCNN1G
Ensembl Gene ID:
ENSAPLG00000013925
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047072
497936 - 508159
10224
ENSAPLT00000023967
497936 - 508159
10224
ENSAPLT00000014553
497936 - 508159
10224