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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_500453_501459_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
500453 - 501459
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
AATGCAACAATA
Flanking Amino Acid:
CFFDGLSCDKRHFTRFHHPL
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
75
35.3
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
83.7
0.76
0.9
81.2
36.5
Minor 5ss
28.4
-2.5
2.9
33.4
41.6
Minor BPS
42.4
-0.5
2
53.82
38.1

Associated Gene:

Gene:
SCNN1G
Ensembl Gene ID:
ENSAPLG00000013925
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047072
497936 - 508159
10224
ENSAPLT00000023967
497936 - 508159
10224
ENSAPLT00000014553
497936 - 508159
10224