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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_502186_504781_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
502186 - 504781
Intron Length:
2596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TTCTGGTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTTCCCAAACC
Flanking Amino Acid:
AAATSIGMHFTRSRKLSKPY
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
66.6
32.3
Major BPS
79
0.72
1
69
38.9
Major PPT
78.7
0.65
0.9
76.1
37.8
Minor 5ss
30.1
-2.3
3.2
40.3
40.2
Minor BPS
60
0.29
2
76.29
39.8

Associated Gene:

Gene:
SCNN1G
Ensembl Gene ID:
ENSAPLG00000013925
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023967
497936 - 508159
10224
ENSAPLT00000014553
497936 - 508159
10224
ENSAPLT00000047072
497936 - 508159
10224