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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5024681_5049743_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5024681 - 5049743
Intron Length:
25063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAAGG
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTACTT
Flanking Amino Acid:
KLHAHNTELEAQLSQVLEEM
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.7
0.56
1.1
75.2
38.8
Minor 5ss
32.9
-1.9
2.9
40.9
44.9
Minor BPS
59.5
0.38
1.8
78.91
37.7

Associated Gene:

Gene:
MAD1L1
Ensembl Gene ID:
ENSAPLG00000015788
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016488
4881238 - 5228903
347666