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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_506171_506607_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
506171 - 506607
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TCCCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GCTTCTCAAACA
Flanking Amino Acid:
YCNYKKNPNWMYCYYRLHEK
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
68.6
36.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.9
0.78
0.7
79.8
25.6
Minor 5ss
31.2
-2.2
3.2
38.1
40.6
Minor BPS
49.6
-0
2
64.35
42.2

Associated Gene:

Gene:
SCNN1G
Ensembl Gene ID:
ENSAPLG00000013925
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047072
497936 - 508159
10224
ENSAPLT00000023967
497936 - 508159
10224
ENSAPLT00000014553
497936 - 508159
10224