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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_506687_506764_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
506687 - 506764
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAA
U12 Branch Point Sequence:
TCACAGCTAACA
Flanking Amino Acid:
GCQQICKDACSFKEWALTTS
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
75.3
40.8
Major BPS
49.8
-0
1.1
59
36.1
Major PPT
74.5
0.55
0.7
68.7
25
Minor 5ss
40.5
-1.1
3.1
57.5
46.7
Minor BPS
42.1
-0.6
2.4
55.65
42.6

Associated Gene:

Gene:
SCNN1G
Ensembl Gene ID:
ENSAPLG00000013925
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014553
497936 - 508159
10224
ENSAPLT00000047072
497936 - 508159
10224
ENSAPLT00000023967
497936 - 508159
10224