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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5067352_5075830_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5067352 - 5075830
Intron Length:
8479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTTATTATCT
Flanking Amino Acid:
SITKEEINSLRLKIEELEAE
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
74.1
38.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.4
0.77
0.7
77.2
31.5
Minor 5ss
37.3
-1.4
3.1
47.6
48.1
Minor BPS
60.7
0.41
1.9
81.71
39.5

Associated Gene:

Gene:
MAD1L1
Ensembl Gene ID:
ENSAPLG00000015788
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016488
4881238 - 5228903
347666