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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_506823_507086_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
506823 - 507086
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATAATTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TTTTCTATAATT
Flanking Amino Acid:
IAQWPSIVSEDWMLRVLSWD
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
35
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
78.8
0.65
0.9
70
44.9
Minor 5ss
36.9
-1.5
2.7
45.6
42.5
Minor BPS
75.9
0.89
1.5
92.75
29.1

Associated Gene:

Gene:
SCNN1G
Ensembl Gene ID:
ENSAPLG00000013925
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047072
497936 - 508159
10224
ENSAPLT00000023967
497936 - 508159
10224
ENSAPLT00000014553
497936 - 508159
10224