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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_507146_507345_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
507146 - 507345
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTACTAAACC
Flanking Amino Acid:
DKGQKINKLNKTDLANLMVF
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
82.3
0.73
0.6
81.6
23.4
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
69.6
0.6
1.8
83.56
36

Associated Gene:

Gene:
SCNN1G
Ensembl Gene ID:
ENSAPLG00000013925
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047072
497936 - 508159
10224
ENSAPLT00000023967
497936 - 508159
10224
ENSAPLT00000014553
497936 - 508159
10224