Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_507422_507772_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

507422 - 507772

Intron Length:

351

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCACA

5'SS Class:

major

3'SS Sequence:

TCTTCTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTCAT

U12 Branch Point Sequence:

AGCTGCTGACCT

Flanking Amino Acid:

RFISENPTNTIVILLSNFGG

Intron Amino Acid Position:

535

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

38.8

Major BPS

73.5

0.58

73.6

32.5

Major PPT

88.5

0.87

0.7

80.8

31.2

Minor 5ss

34.7

-1.7

2.8

41.9

44.5

Minor BPS

-0.2

2.1

63.82

46.1

Associated Gene:

Gene:

SCNN1G

Ensembl Gene ID:

ENSAPLG00000013925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023967

497936 - 508159

10224

ENSAPLT00000014553

497936 - 508159

10224