Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_527756_528230_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

527756 - 528230

Intron Length:

475

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGGTGCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTGTTCAGAATA

Flanking Amino Acid:

LNSSNPGAEFGLKLILDISQ

Intron Amino Acid Position:

359

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.1

31.1

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

71.6

0.49

64.8

41.4

Minor 5ss

29.9

-2.3

3.3

42.5

Minor BPS

48.8

-0

1.7

60.4

Associated Gene:

Gene:

SCNN1B

Ensembl Gene ID:

ENSAPLG00000013489

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024065

524294 - 535472

11179

ENSAPLT00000014085

524294 - 535443

11150