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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5377289_5378973_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5377289 - 5378973
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
ATCTGTATACCT
Flanking Amino Acid:
TTKVLLGKDEPLVHVCAKNL
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
45
-0.3
2.2
66.51
44.6

Associated Gene:

Gene:
PSMG3
Ensembl Gene ID:
ENSAPLG00000015754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016421
5376352 - 5379529
3178