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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5385709_5385802_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5385709 - 5385802
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
CTTCTACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAC
U12 Branch Point Sequence:
TTGGCTTCTACT
Flanking Amino Acid:
IMTEIRGKPIASSCFYGTCC
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.4
67.1
44.6
Major BPS
51.6
0.04
1.3
53.8
41.6
Major PPT
82.6
0.73
0.8
73.7
35.8
Minor 5ss
35.3
-1.7
3.3
44.7
43.5
Minor BPS
49.3
0.03
2
71.79
45.3

Associated Gene:

Gene:
TMEM184A
Ensembl Gene ID:
ENSAPLG00000015550
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016219
5384018 - 5388272
4255