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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5386532_5386914_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5386532 - 5386914
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAG
U12 Branch Point Sequence:
CTCGCTCCAGCA
Flanking Amino Acid:
AFGKYHDGDFNVRSGYLYIT
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.3
38.9
Major BPS
39.4
-0.6
1.6
46.1
46.9
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
32.1
-2
3.3
39.9
40.1
Minor BPS
39.5
-0.8
2
47.53
43

Associated Gene:

Gene:
TMEM184A
Ensembl Gene ID:
ENSAPLG00000015550
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016219
5384018 - 5388272
4255