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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5387085_5387171_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5387085 - 5387171
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TTCCCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
CAGAGCTGACCC
Flanking Amino Acid:
KAVIFLSFWQGTLLAILEKC
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
77.3
0.61
0.9
72.5
32.2
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
40.4
-0.7
2
44.82
43.1

Associated Gene:

Gene:
TMEM184A
Ensembl Gene ID:
ENSAPLG00000015550
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016219
5384018 - 5388272
4255