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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5387370_5387487_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5387370 - 5387487
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTCTT
5'SS Class:
major
3'SS Sequence:
TCCTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGTCCCATCACC
Flanking Amino Acid:
VYREKKENTTANLAPMQSIS
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
72.7
44.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
92.1
0.95
0.6
91.2
20.4
Minor 5ss
44.3
-0.6
3.3
67.2
43.9
Minor BPS
52.8
0.07
2.1
70.16
40.7

Associated Gene:

Gene:
TMEM184A
Ensembl Gene ID:
ENSAPLG00000015550
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016219
5384018 - 5388272
4255