About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5397255_5398154_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5397255 - 5398154
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTCC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAAAA
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.5
39
Major BPS
48.3
-0.1
1.2
54.7
37.8
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
37.6
-1.4
3.2
43.1
44.2
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
MAFK
Ensembl Gene ID:
ENSAPLG00000015396
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016041
5395400 - 5399087
3688