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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_541644_542980_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
541644 - 542980
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTACTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTATCCTTACTC
Flanking Amino Acid:
HSTKQLATDIDYLINVMDAL
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.3
36.4
Major BPS
77.3
0.68
1
81.5
27
Major PPT
82.8
0.74
0.8
76.2
32.3
Minor 5ss
44.3
-0.6
2.8
53.8
44.4
Minor BPS
72.2
0.68
1.6
79.12
36.5

Associated Gene:

Gene:
COG7
Ensembl Gene ID:
ENSAPLG00000012674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013246
540657 - 563723
23067