Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5418985_5419706_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5418985 - 5419706

Intron Length:

722

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGTTGAA

5'SS Class:

major

3'SS Sequence:

TTTTTTCCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTGAG

U12 Branch Point Sequence:

TTTTTTTTCCTT

Flanking Amino Acid:

DENWPEIFVKVYIEDSLGER

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.8

0.33

1.3

62.5

37.8

Major BPS

46.9

-0.1

1.7

47.8

Major PPT

90.2

0.9

0.6

89.9

18.2

Minor 5ss

-2.6

3.1

32.1

42.4

Minor BPS

43.7

-0.4

3.5

78.3

39.3

Associated Gene:

Gene:

INTS1

Ensembl Gene ID:

ENSAPLG00000014273

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014947

5417500 - 5445505

28006