About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5420723_5420844_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5420723 - 5420844
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAG
U12 Branch Point Sequence:
GCTGCAGTAGTT
Flanking Amino Acid:
RLEMWLQNPKLTKPAQDLLM
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
52.1
0.05
1.6
63.1
44.4
Major PPT
86.2
0.81
0.7
81
24.1
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
40.1
-0.6
2.3
57.31
45.7

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006