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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5420991_5421280_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5420991 - 5421280
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCAGCTCTGATA
Flanking Amino Acid:
VLLNHYMLCVRELLNAHRDN
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
79
0.72
1
69
38.9
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
46.8
-0.2
1.7
54.84
38.5

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006