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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5421423_5421771_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5421423 - 5421771
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTATGGTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTTCTGTATG
Flanking Amino Acid:
LQHSSEQAPKYLAMVFQDLL
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
69.2
0.43
1
65.2
45.4
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
55
0.01
1.9
67.51
40.2

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006