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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5421949_5422173_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5421949 - 5422173
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCACTT
5'SS Class:
major
3'SS Sequence:
CCTGTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTGATTTGACT
Flanking Amino Acid:
EAQYAEMEFKERFVIHITDL
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
66.6
44.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
81.7
0.71
0.8
80.3
31.8
Minor 5ss
42.4
-0.8
3.4
65.7
45.3
Minor BPS
65
0.55
1.6
83.83
37.3

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006