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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5422283_5422806_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5422283 - 5422806
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
ACCTGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGGTTTGTAACC
Flanking Amino Acid:
GIAWDKGEKKNLEVLRSFQN
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
71.7
40.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
77
0.61
0.9
73
36.7
Minor 5ss
40.5
-1.1
2.9
49
41.4
Minor BPS
53.3
0.08
2
65.93
40.3

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006