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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5425521_5425855_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5425521 - 5425855
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GTATCCCTGACT
Flanking Amino Acid:
VVAAFNPENIGLAAWEEYPS
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
75.8
0.58
1
69.6
41.6
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
66.7
0.61
1.7
82.18
38.6

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006