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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5428481_5429399_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5428481 - 5429399
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAGG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TGCTTAGTAAAG
Flanking Amino Acid:
EQGQHNDLALDVARLIVERS
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
64.2
41.6
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
27.6
-2.6
2.7
28.4
37.1
Minor BPS
42.6
-0.7
2.3
49.95
43.8

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006