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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5429568_5429930_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5429568 - 5429930
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATTGTTCATCT
Flanking Amino Acid:
SKEGEEVYSWSESQDQVFLR
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
87.5
0.84
0.8
80.2
37.3
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
45.4
-0.2
2.1
64.84
45.8

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006