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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_543125_546236_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
543125 - 546236
Intron Length:
3112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTGA
5'SS Class:
major
3'SS Sequence:
ATTTTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
CTAATGAGAATT
Flanking Amino Acid:
AGKLPYPPEQGDELPELDNM
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
66.6
41.6
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
85.8
0.8
0.9
85.1
34.9
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
38.8
-0.7
2.2
54.82
41.1

Associated Gene:

Gene:
COG7
Ensembl Gene ID:
ENSAPLG00000012674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013246
540657 - 563723
23067