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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5432450_5432827_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5432450 - 5432827
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
LLTASLPARRDSAETARSKS
Intron Amino Acid Position:
1166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
76.9
34.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.2
0.68
0.9
73.4
40.6
Minor 5ss
47.5
-0.2
2.8
64.9
46.3
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
INTS1
Ensembl Gene ID:
ENSAPLG00000014273
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014947
5417500 - 5445505
28006